I have the same problem and I'm trying to solve it since one Week.
1) I use Repackager to create a .inc
2) I use Developer to create a .msi
3) I use GPO to install my application : I use assignation
I reboot the computer and I'm logging with user right
The shorcut of my application is on my start menu.
But if I click on the link, I have a MSI error with the shortcut, and the application didn't launch.
If a look in the folder, all my application's files have been installed.
If I use "Control Panel" with the user to add the application, all is working fine.
How does I create the msi in order to use assignation correctly, without error.
Thanks
Ludo