I have repackaged a few applications and have noticed that AdminStudio does not seem to properly use the [SystemFolder] property. Instead it uses the following: {SYSTEM32} [WindowsFolder]System32
It appears to make a SYSTEM32 entry in the directory table and assign it a DirectoryParent of WindowsFolder and DefaultDir of System32, instead of using the SystemFolder directory entry.
I was given release 3.00.056 from Jeff Greenwald on Wednesday. I don't know if that is the final version, but it is still having the same problem. I re-imported my Quicktime capture into this new version and it created a {SYSTEM32} entry in the directory table.